Plot: In the near future, human organs are enhanced by the cybernetics technology developed by the powerful Hanka Robotics Corporation owned by Cutter. Dr. Ouelet is responsible for the development of the secret project 2571 of a full mechanical body to be connected to a human brain. She uses the brain of a young woman that lost her parents in a cyber attack as subject of a prototype. One year later, the woman is ranked Major and has joined Section 9, an anti-terrorist division commanded by Chief Daisuke Aramaki, working with agents Batou and Togusa. She needs to use a medicine to help the integration of her brain with the mechanical body and has no recollections of her previous life. When Section 9 hunts down the terrorist Kuze, Major learns the secrets about Hanka Robotics and the experiment she was subjected. Now she faces her ultimate enemy: Kuze, a criminal who has managed to hack into the brains of androids and control them.
Alternative Plot: In the near future, Major is the first of her kind: a human who is cyber-enhanced to be a perfect soldier devoted to stopping the world's most dangerous criminals. When terrorism reaches a new level that includes the ability to hack into people's minds and control them, Major is uniquely qualified to stop it. As she prepares to face a new enemy, Major discovers that her life was stolen instead of saved. Now, she will stop at nothing to recover her past while punishing those who did this to her.
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